How do you decide when a microbiome study is ready to publish?
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I keep running into the same problem: 16S data look interesting, but I'm never sure whether I've sampled enough sites, timepoints, or controls to make a defensible claim.
Reviewers often ask for more samples or a different sequencing depth after the fact.
How do you decide that a microbiome dataset is complete enough to submit, and what do you do when reviewers want more?